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write a 4-5 page paper (double-spaced, size 12 font, 0.8 in. margins) (longer lengths are acceptable) that covers the scientific literature on the topic, written in the style of a short review article similar to the ‘Perspectives’ articles in the journal Science. It should include material from both primary and secondary sources. The paper must be properly cited and referenced. At the end of the draft, include a paragraph evaluating your draft and thoughts about how you will proceed with revision.The draft will be evaluated based on these criteria: Is it a complete draft, with all or most of the scientific information present and cited properly? Is the science accurate? Are related points tied together? Is the author ‘present’ in the paper?The topic is the pros and cons of coffee consumption and what are some health-related problems with drinking too much or too little coffee, does drinking coffee daily benefit your health? The articles provided in the attachment should be all used. This should be a review article. The document named “Annotate Bibliography” contains multiple primary and secondary articles. Feel free to search for more.
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Scientific Controversy Assignments
Annotated Bibliography
Due Feb. 23
Your goal for your annotated bibliography assignment is to find and read at least 10 articles directly
relevant to your topic and most likely included in your paper. That means you must find and skim
the titles/abstracts of many more than 10. You need to record them using the document attached to
that assignment and submit on Canvas.
Your 10 sources must include: Three sources written for non-scientists that have valid
information, three review articles written for scientists, and three primary source articles in peer
reviewed journals.
For each of the minimum of 10 articles, you need to record and submit:
1. Bibliographic information for both in text citations and the Reference section. In this class we
will use the Name-Year system (APA) for formatting. (See Knisely.)
2. How you originally identified this article. You may have identified the article by a
recommendation from a professor or fellow class member, or alternatively, it could have been
cited by another article. In these cases, identify the sources. If it was a database search, describe
the search you did, giving keyword(s), etc. You may refer to a particular search in the Science
References assignment if you wish; in this case only the number of the search is required.
3. How you got the full text of the article. This could be through Google scholar, through the
University of Redlands library subscriptions, from Loma Linda’s library subscriptions,
interlibrary loan, etc.
4. What piece of information in this article is critical for your reader to understand your topic?
This can be brief but should be more than a topic. For example, don’t just write “probiotics,”
but instead write “use of probiotics to treat C. difficile infection.”
5. Lastly, you should write a statement at the end of your annotated bibliography listing any topics
for which you still need to find articles. For example, perhaps you have a thorough number of
articles about most of your topic, but in writing the outline of your paper, you realize you have a
hole. List any areas where you realize you still have holes to fill in your literature search.
Non-scientists:
1. Baccarelli, A. (2023, February 2). Coffee. The Nutrition Source.
https://www.hsph.harvard.edu/nutritionsource/food-features/coffee
a. In-text citation: (Baccarelli, 2023)
b. Google: Coffee consumption/Coffee health issues.
c. The full text of the article is available for free.
d. Coffee consumption does not increase the risk of cardiovascular diseases and
cancers. The consumption of 3 to 5 standard cups of coffee daily has been
consistently associated with a reduced risk of several chronic diseases.
2. Feller, M., & Nordqvist, J. (2023, November 16). Coffee health benefits: Diabetes, heart
health, liver cancer, and more. Medical News Today.
https://www.medicalnewstoday.com/articles/270202
a. In-text citation: (Feller & Nordqvist, 2023)
b. Google: Coffee consumption/Coffee health issues.
c. The full text of the article is available for free.
d. Coffee consumption may help protect against type 2 diabetes and people who are
trying to lose weight.
3. Baker, N. (2023, February 8). Great News for Coffee Drinkers: Your Daily Cup could help
lower your blood pressure, according to New Study. Martha Stewart.
https://www.marthastewart.com/8367588/drinking-coffee-lowers-blood-pressure-study-febr
uary-2023
a. In-text citation: (Baker, 2023)
b. Google: Coffee consumption/Coffee health issues.
c. The full text of the article is available for free.
d. Coffee does not have an active role in causing cardiovascular diseases, diabetes, and
neurodegenerative and liver conditions.
4. Brown, J. (2022, February 24). Why coffee could be good for your health. BBC News.
https://www.bbc.com/future/article/20201028-the-benefits-of-coffee-is-coffee-good-for-healt
h
a. In-text citation: (Brown, 2022)
b. Google: Coffee consumption/Coffee health issues/Coffee causing health diseases.
c. The full text of the article is available for free.
d. Coffee drinkers were more likely to smoke and had unhealthier diets than non-coffee
drinkers, meaning that coffee may be overriding the effects of unhealthy behaviors.
Review articles:
1. Poole, R., Kennedy, O. J., Roderick, P., Fallowfield, J. A., Hayes, P. C., & Parkes, J. (2017).
Coffee consumption and health: umbrella review of meta-analyses of multiple health
outcomes. BMJ (Clinical research ed.), 359, j5024. https://doi.org/10.1136/bmj.j5024
a.
b.
c.
d.
In-text citation: (Poole et al,. 2017)
PubMed: Coffee consumption/Coffee health issues and filtering with review articles.
The full text of the article is available through PMC for free.
Coffee consumption is associated with a lower risk of several specific cancers and
neurological, metabolic, and liver conditions.
2. Zhao, Y., Wu, K., Zheng, J., Zuo, R., & Li, D. (2015). Association of coffee drinking with
all-cause mortality: a systematic review and meta-analysis. Public health nutrition, 18(7),
1282–1291. https://doi.org/10.1017/S1368980014001438
a. In-text citation: (Zhao et al,. 2015)
b. PubMed: Using the “Similar Articles” button from the first article.
c. The full text of the article is available through PMC for free.
d. Light/moderate coffee intake is associated with a reduced risk of death from all
causes, particularly in women.
3. Hu, E. A., Selvin, E., Grams, M. E., Steffen, L. M., Coresh, J., & Rebholz, C. M. (2018).
Coffee Consumption and Incident Kidney Disease: Results From the Atherosclerosis Risk in
Communities (ARIC) Study. American journal of kidney diseases : the official journal of the
National Kidney Foundation, 72(2), 214–222. https://doi.org/10.1053/j.ajkd.2018.01.030
a. In-text citation: (Hu et al,. 2018)
b. PubMed: Using the “Similar Articles” button from the second article.
c. The full text of the article is available through PMC for free.
d. Higher coffee consumption had a lower risk for incident Chronic Kidney Disease.
Primary source:
1. Komorita, Y., Ohkuma, T., Iwase, M., Fujii, H., Ide, H., Oku, Y., Higashi, T., Oshiro, A.,
Sakamoto, W., Yoshinari, M., Nakamura, U., & Kitazono, T. (2022). Relationship of coffee
consumption with a decline in kidney function among patients with type 2 diabetes: The
Fukuoka Diabetes Registry. Journal of diabetes investigation, 13(6), 1030–1038.
https://doi.org/10.1111/jdi.13769
a. In-text citation: (Komorita et al,. 2022)
b. PubMed: Using the “Similar Articles” button from the second article.
c. The full text of the article is available through PMC for free.
d. Coffee consumption is associated with a lower risk of decline of estimated
glomerular function rate in type 2 diabetes patients.
2. Komorita, Y., Iwase, M., Fujii, H., Ohkuma, T., Ide, H., Jodai-Kitamura, T., Yoshinari, M.,
Oku, Y., Higashi, T., Nakamura, U., & Kitazono, T. (2020). Additive effects of green tea and
coffee on all-cause mortality in patients with type 2 diabetes mellitus: the Fukuoka Diabetes
Registry. BMJ open diabetes research & care, 8(1), e001252.
https://doi.org/10.1136/bmjdrc-2020-001252
a. In-text citation: (Komorita et al,. 2020)
b. PubMed: Using the “Similar Articles” button from the first article.
c. The full text of the article is available through PMC for free.
d. Higher consumption of green tea and coffee was associated with reduced all-cause
mortality, specifically type 2 diabetes.
3. Loureiro, L. M. R., Dos Santos Neto, E., Molina, G. E., Amato, A. A., Arruda, S. F., Reis, C.
E. G., & da Costa, T. H. M. (2021). Coffee Increases Post-Exercise Muscle Glycogen
Recovery in Endurance Athletes: A Randomized Clinical Trial. Nutrients, 13(10), 3335.
https://doi.org/10.3390/nu13103335
a. In-text citation: (Loureiro et al,. 2021)
b. PubMed: Using the “Similar Articles” button from the second article.
c. The full text of the article is available through PMC for free.
d. Coffee with the recommended amounts of carbohydrates favors post-exercise muscle
glycogen resynthesis when followed by an exercise session.
Most of the articles I found do not explain what the past researchers aimed for or what was found,
in the past, coffee was believed to lead to and cause health problems, instead of preventing them.
the consumption limits for men, women, and other patients. as well as what kind of coffee is the
best for working to prevent health diseases.
Relationship of coffee consumption with a decline in kidney function among patients
with type 2 diabetes: The Fukuoka Diabetes Registry:
1. What is the question the scientists were asking?
a. Would coffee consumption lower the risk of declination of Estimated Glomerular
Function Rate (eGFR) in diabetes patients?
2. What approach did they take to ask the question? (This question is asking for their logic,
not a list of their methods.)
a. Testing to see if patients who drink coffee daily will have a decrease in change of
eGFR.
3. Which figure is the most relevant to their question, and why?
a. Figure 1. The figure represents the change in eGFR in patients drinking coffee
and not drinking coffee in a year, and it clearly shows that there is a decrease in
change comparing the ones who don’t drink coffee and those who drink coffee
daily.
4. What is the answer to their question?
a. Coffee consumption is associated with a lower risk of decline in eGFR in patients
with type 2 diabetes.
Additive effects of green tea and coffee on all-cause mortality in patients with type 2
diabetes mellitus: the Fukuoka Diabetes Registry:
5. What is the question the scientists were asking?
a. What is the effect of consuming green tea/coffee on mortality in patients with
type 2 diabetes?
6. What approach did they take to ask the question?
a. Testing patients with type 2 diabetes who drink coffee daily and those who don’t,
and comparing the multivariable-adjusted HRs of all-cause mortality value.
7. Which figure is the most relevant to their question, and why?
a. Figure 1. It shows that the multivariable-adjusted HRs of all-cause mortality were
reduced compared to the participants who don’t drink coffee daily.
8. What is the answer to their question?
a. Consumption of coffee reduced all-cause mortality, especially when combined
with green tea appeared to be additive in patients with type 2 diabetes.
Coffee Increases Post-Exercise Muscle Glycogen Recovery in Endurance Athletes:
9. What is the question the scientists were asking?
a. Will drinking coffee after exercise affect muscle glycogen recovery positively?
10. What approach did they take to ask the question?
a. Testing participants to see if drinking coffee after exercising would increase
muscle glycogen recovery activity.
11. Which figure is the most relevant to their question, and why?
a. Figure 4. The graph showed a difference in glycogen accumulation between the
consumption of coffee + milk compared to just milk.
12. What is the answer to their question?
a. Consumption of coffee improved muscle glycogen resynthesis during the
recovery period after exercise (compared to sweetened milk).
ORIGINAL ARTICLE
Relationship of coffee consumption with a
decline in kidney function among patients with
type 2 diabetes: The Fukuoka Diabetes Registry
Yuji Komorita1 , Toshiaki Ohkuma1 , Masanori Iwase1,2* , Hiroki Fujii1 , Hitoshi Ide1,2, Yutaro Oku1, Taiki Higashi1,
Ayaka Oshiro1, Wakako Sakamoto1, Masahito Yoshinari1, Udai Nakamura1,3, Takanari Kitazono1
1
Department of Medicine and Clinical Science, Graduate School of Medical Sciences, Kyushu University, Fukuoka, Japan, 2Diabetes Center, Hakujyuji Hospital, Fukuoka, Japan, and
Steel Memorial Yawata Hospital, Kitakyushu, Japan
3
Keywords
Coffee, Estimated glomerular filtration
rate, Type 2 diabetes
*Correspondence
Masanori Iwase
Tel.: +81-92-642-5256
Fax: +81-92-642-5271
E-mail address:
[email protected]
J Diabetes Investig 2022; 13: 1030–
1038
doi: 10.1111/jdi.13769
ABSTRACT
Aims/Introduction: The evidence regarding the effects of coffee consumption on
incident chronic kidney disease is inconclusive, and no studies have investigated the
relationship in patients with diabetes. We aimed to prospectively investigate the
relationship between coffee consumption and the decline in estimated glomerular
function rate (eGFR) in patients with type 2 diabetes.
Materials and Methods: A total of 3,805 patients (2,112 men, 1,693 women) with
type 2 diabetes (mean age 64.2 years) and eGFR ≥60 mL/min/1.73 m2 were followed
(completion of follow up, 97.6%; median 5.3 years). Coffee consumption was assessed at
baseline. The end-point was a decline in eGFR to
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